HW 7 - Equine Problem
Transcription
Zebra
DNA (3' end) ...GATACCCATAAGCAGGGATGACTGTTG... (5' end)
(5' end) ...CTATGGGTATTCGTCCCTACTGACAAC... (3' end)
(to RNA)
mRNA(5' end) ...CUAUGGGUAUUCGUCCCUACUGACAAC... (3' end)
Donkey
DNA (3' end) ...GGTACCCATCAGCAGAGAGTACTGTTC... (5' end)
(5' end) ...CCATGGGTAGTCGTCTCTCATGACAAG... (3' end)
(to RNA)
mRNA(5' end) ...CCAUGGGUAGUCGUCUCUCAUGACAAG... (3' end)
Horse
DNA (3' end) ...CGTACCCATCATCAGAGAGTACTGTTC... (5' end)
(5' end) ...GCATGGGTAGTAGTCTCTCATGACAAG... (3' end)
(to RNA)
mRNA(5' end) ...GCAUGGGUAGUAGUCUCUCAUGACAAG... (3' end)
Translation
Zebra
mRNA(5' end) ...CUAUGGGUAUUCGUCCCUACUGACAAC... (3' end)
(start)
AUG GGU AUU CGU CCC UAC UGA CAAC
M G I R P Y STOP
Donkey
mRNA(5' end) ...CCAUGGGUAGUCGUCUCUCAUGACAAG... (3' end)
(start)
AUG GGU AGU CGU CUC UCA UGA CAAG
M G S R L S STOP
Horse
mRNA(5' end) ...GCAUGGGUAGUAGUCUCUCAUGACAAG... (3' end)
(start)
AUG GGU AGU AGU CUC UCA UGA CAAG
M G S S L S STOP
PAM Score
Donkey vs. Zebra
MGSRLS
MGIRPY
M,M = +5
G,G = +6
S,I = -2
R,R = +5
L,P = -3
S,Y = -2
PAM = +5 +6 -2 +5 -3 -2 = +9
Horse vs. Donkey
MGSSLS
MGSRLS
M,M = +5
G,G = +6
S,S = +4
S,R = -1
L,L = +4
S,S = +4
PAM = +5 +6 +4 -1 +4 +4 = +22
Horse vs. Zebra
MGSSLS
MGIRPY
M,M = +5
G,G = +6
S,I = -2
S,R = -1
L,P = -3
S,Y = -2
PAM = +5 +6 -2 -1 -3 -2 = +3
Conclusion
It seems that the evolutionary data suggests that horse and donkeys are the closest related species. It's more likely that